MIAPPE

Mapping for MIAPPE Checklist 1.1

MIRA uses the mapping of the MIAPPE Checklist 1.1 to ISA Tab and BrAPI as proposed in MIAPPE Checklist Mapping:

MIAPPE ID MIAPPE Field ISA Tab File ISA Tab Section ISA Tab Field BrAPI Call BrAPI Object BrAPI Field
DM-1 Investigation
DM-2 Investigation unique ID Investigation INVESTIGATION Investigation Identifier /trials/{trialDbId} None trialDbId
DM-3 Investigation title Investigation INVESTIGATION Investigation Title /trials/{trialDbId} None trialName
DM-4 Investigation description Investigation INVESTIGATION Investigation Description /trials/{trialDbId} None trialDescription
DM-5 Submission date Investigation INVESTIGATION Investigation Submission Date /trials/{trialDbId} datasetAuthorships submissionDate
DM-6 Public release date Investigation INVESTIGATION Investigation Public Release Date /trials/{trialDbId} datasetAuthorships publicReleaseDate
DM-7 License Investigation INVESTIGATION Comment[License] /trials/{trialDbId} datasetAuthorships license
DM-8 MIAPPE version Investigation INVESTIGATION Comment[MIAPPE version] out of scope
DM-9 Associated publication Investigation INVESTIGATION PUBLICATIONS Investigation Publication DOI /trials/{trialDbId} publications publicationPUI
DM-10 Study
DM-11 Study unique ID Investigation STUDY Study Identifier /studies/{studyDbId} None studyDbId
DM-12 Study title Investigation STUDY Study Title /studies/{studyDbId} None studyName
DM-13 Study description Investigation STUDY Study Description /studies/{studyDbId} None studyDescription
DM-14 Start date of study Investigation STUDY Comment[Study Start Date] /studies/{studyDbId} None startDate
DM-15 End date of study Investigation STUDY Comment[Study End Date] /studies/{studyDbId} None endDate
DM-16 Contact institution Investigation STUDY Comment[Study Contact Institution] /studies/{studyDbId} None instituteName
DM-17 Geographic location (country) Investigation STUDY Comment[Study Country] /studies/{studyDbId} location countryName / countryCode
DM-18 Experimental site name Investigation STUDY Comment[Study Experimental Site] /studies/{studyDbId} location name
DM-19 Geographic location (latitude) Investigation STUDY Comment[Study Latitude] /studies/{studyDbId} location latitude
DM-20 Geographic location (longitude) Investigation STUDY Comment[Study Longitude] /studies/{studyDbId} location longitude
DM-21 Geographic location (altitude) Investigation STUDY Comment[Study Altitude] /studies/{studyDbId} location altitude
DM-22 Description of the experimental design Investigation STUDY DESIGN DESCRIPTORS Comment[Study Design Description] /studies/{studyDbId} experimentalDesign description
DM-23 Type of experimental design Investigation STUDY DESIGN DESCRIPTORS Study Design Type /studies/{studyDbId} experimentalDesign PUI
DM-24 Observation unit level hierarchy Investigation STUDY DESIGN DESCRIPTORS Comment[Observation Unit Level Hierarchy] /studies/{studyDbId} additionalInfo observationUnitLevelHierarchy
DM-25 Observation unit description Investigation STUDY DESIGN DESCRIPTORS Comment[Observation Unit Description] /studies/{studyDbId} None observationUnitsDescription
DM-26 Description of growth facility Investigation STUDY DESIGN DESCRIPTORS Comment[Description of Growth Facility] /studies/{studyDbId} growthFacility description
DM-27 Type of growth facility Investigation STUDY DESIGN DESCRIPTORS Comment[Type of Growth Facility] /studies/{studyDbId} growthFacility PUI
DM-28 Cultural practices Investigation STUDY PROTOCOLS Study Protocol Description (for Growth protocol) /studies/{studyDbId} None culturalPractices
DM-29 Map of experimental design Investigation STUDY DESIGN DESCRIPTORS Comment[Map of Experimental Design] /studies/{studyDbId} additionalInfo mapOfExperimentalDesign
DM-30 Person
DM-31 Person name Investigation INVESTIGATION CONTACTS / STUDY CONTACTS Investigation Person Last Name - First Name - Mid Initials / Study Person Last Name - First Name - Mid Initials /studies/{studyDbId} contacts name
DM-32 Person email Investigation INVESTIGATION CONTACTS / STUDY CONTACTS Investigation Person Email / Study Person Email /studies/{studyDbId} contacts email
DM-33 Person ID Investigation INVESTIGATION CONTACTS / STUDY CONTACTS Comment[Person ID] /studies/{studyDbId} contacts orcid / contactDbId
DM-34 Person role Investigation INVESTIGATION CONTACTS / STUDY CONTACTS Investigation Person Roles / Study Person Roles /studies/{studyDbId} contacts type
DM-35 Person affiliation Investigation INVESTIGATION CONTACTS / STUDY CONTACTS Investigation Person Affiliation / Study Person Affiliation /studies/{studyDbId} contacts instituteName
DM-36 Data File
DM-37 Data file link Investigation STUDY Comment[Study Data File Link] /studies/{studyDbId} dataLinks type
DM-38 Data file description Investigation STUDY Comment[Study Data File Description] /studies/{studyDbId} dataLinks name / url
DM-39 Data file version Investigation STUDY Comment[Study Data File Version] /studies/{studyDbId} dataLinks version
DM-40 Biological Material
DM-41 Biological material ID Study None Source Name /germplasm/{germplasmDbId} None accessionNumber
DM-42 Organism Study Source Characteristics[Organism] /germplasm/{germplasmDbId} taxonIds sourceName, taxonId
DM-43 Genus Study Source Characteristics[Genus] /germplasm/{germplasmDbId} None germplasmGenus
DM-44 Species Study Source Characteristics[Species] /germplasm/{germplasmDbId} None germplasmSpecies
DM-44 Infraspecific name Study Source Characteristics[Infraspecific Name] /germplasm/{germplasmDbId} None subtaxa
DM-45 Biological material latitude Study Source Characteristics[Biological Material Latitude] /germplasm/{germplasmDbId} germplasmOrigin latitudeDecimal
DM-46 Biological material longitude Study Source Characteristics[Biological Material Longitude] /germplasm/{germplasmDbId} germplasmOrigin longitudeDecimal
DM-47 Biological material altitude Study Source Characteristics[Biological Material Altitude] /germplasm/{germplasmDbId} germplasmOrigin altitude
DM-48 Biological material coordinates uncertainty Study Source Characteristics[Biological Material Coordinates Uncertainty] /germplasm/{germplasmDbId} germplasmOrigin coordinateUncertainty
DM-49 Biological material preprocessing Study Source Characteristics[Biological Material Preprocessing] /germplasm/{germplasmDbId} None germplasmPreprocessing
DM-50 Material source ID (Holding institute/stock centre, accession) Study Source Characteristics[Material Source ID] /germplasm/{germplasmDbId}/mcpd donorInfo donorAccessionNumber
DM-51 Material source DOI Study Source Characteristics[Material Source DOI] /germplasm/{germplasmDbId}/mcpd donorInfo donorAccessionPui
DM-52 Material source latitude Study Source Characteristics[Material Source Latitude] /germplasm/{germplasmDbId}/mcpd collectingInfo.collectingSite latitudeDecimal
DM-53 Material source longitude Study Source Characteristics[Material Source Longitude] /germplasm/{germplasmDbId}/mcpd collectingInfo.collectingSite longitudeDecimal
DM-54 Material source altitude Study Source Characteristics[Material Source Altitude] /germplasm/{germplasmDbId}/mcpd collectingInfo.collectingSite elevation
DM-55 Material source coordinates uncertainty Study Source Characteristics[Material Source Coordinates Uncertainty] /germplasm/{germplasmDbId}/mcpd collectingInfo.collectingSite coordinateUncertainty
DM-56 Material source description Study Source Characteristics[Material Source Description] /germplasm/{germplasmDbId} None seedSourceDescription
DM-57 Environment
DM-58 Environment parameter Investigation STUDY PROTOCOLS Study Protocol Parameters Name (for Growth protocol) /studies/{studyDbId} environmentParameters parameterName
DM-59 Environment parameter value Study Growth protocol Parameter Value[ ] /studies/{studyDbId} environmentParameters description
DM-60 Experimental Factor
DM-61 Experimental Factor type Investigation STUDY FACTORS Study Factor Name /observationunits Treatment Factor
DM-62 Experimental Factor description Investigation STUDY FACTORS Comment[Study Factor Description] None None None
DM-63 Experimental Factor values Investigation STUDY FACTORS Comment[Study Factor Values] out of scope
DM-64 Event
DM-65 Event type Investigation STUDY PROTOCOLS Study Protocol Name (for protocol of type Event) /events None eventTypeName
DM-66 Event accession number Investigation STUDY PROTOCOLS Study Protocol URI (for protocol of type Event) /events None eventTypeDbId
DM-67 Event description Investigation STUDY PROTOCOLS Study Protocol Description (for protocol of type Event) /events None description
DM-68 Event date Event file None Event Date /events None date
DM-69 Observation Unit
DM-70 Observation unit ID Study / Assay None Sample Name /observationunits None observationUnitDbId
DM-71 Observation unit type Study Sample Characteristics[Observation Unit Type] /observationunits None observationLevel
DM-72 External ID Study Sample Characteristics[External ID] /observationunits observationUnitXref id/source
DM-73 Spatial distribution Study Sample Characteristics[Spatial distribution] /observationunits None observationLevels
DM-74 Observation Unit factor value Study Source / Sample Factor Value[ ] /observationunits treatments factor/modality
DM-75 Sample
DM-76 Sample ID Assay None Extract Name /samples None sampleDbId
DM-77 Plant structure development stage Assay Extract Characteristics[Plant Structure Development Stage] /samples additionalInfo plantStructureDevelopmentStage
DM-78 Plant anatomical entity Assay Extract Characteristics[Plant Anatomical Entity] /samples None tissueType
DM-79 Sample description Assay Sampling protocol Parameter Value[Sampling Description] /samples additionalInfo samplingDescription
DM-80 Collection date Assay Sampling protocol Parameter Value[Sampling Date] /samples None sampleTimestamp
DM-81 External ID Assay Extract Characteristics[External ID] /samples additionalInfo externalId
DM-82 Observed Variable
DM-83 Variable ID Trait Definition File None Variable ID /variables None observationVariableName
DM-84 Variable name Trait Definition File None Variable name /variables None observationVariableName, observationVariableDbId
DM-85 Variable accession number Trait Definition File None Variable accession number /variables None xref, (observationVariableDbId)
DM-86 Trait Trait Definition File None Trait /variables trait traitName, description
DM-87 Trait accession number Trait Definition File None Trait accession number /variables trait (traitDbId)
DM-88 Method Trait Definition File None Method /variables method methodName
DM-89 Method accession number Trait Definition File None Method accession number /variables method (methodDbId)
DM-90 Method description Trait Definition File None Method description /variables method description
DM-91 Reference associated to the method Trait Definition File None Reference associated to the method /variables method reference
DM-92 Scale Trait Definition File None Scale /variables scale scaleName
DM-93 Scale accession number Trait Definition File None Scale accession number /variables scale (scaleDbId)
DM-94 Time scale Trait Definition File None Time scale None